NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335010_0003262

Scaffold Ga0335010_0003262


Overview

Basic Information
Taxon OID3300034092 Open in IMG/M
Scaffold IDGa0335010_0003262 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14155
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (74.36%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F006543Metagenome / Metatranscriptome370Y
F008812Metagenome / Metatranscriptome327Y
F012108Metagenome / Metatranscriptome283Y
F088817Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0335010_0003262_10712_11086F012108AGGMIKLELGVREALTMIANGCSLDMFEKIVCALEVALGVNQRRVVTITGGMDLDNRISCIKAIRLHTGWGLKESKDWTDALVGGWKYDKFVPASAGAKQSITLKTPEAAEKLLRDLAGFGCEGYLS
Ga0335010_0003262_11315_11563F006543GGAMKKFSFAVDVVADDLDRDGVVESLRSCLSDSLPGDVHANVKAGEVKSFSEQGYKVWRARVTGVTAEQAGDAHTGKVEVEAVA
Ga0335010_0003262_12165_12875F000325GGAGMKTANGNDKLGKENCIVVSRPVGDTCPPDCDFLGNGCYAEDLENIYPGVRPAGMQNLITEKNRIRSMLVDAVKKNKDVRWHERGDFFKDGQLDNEYVDNVLWACESILASGGSLPTMWAYTHIYDTRLSLELGKYINMYASIHDGEDMKQAKAASFKHFAWCDSDTKIAPKRPRSKAKADAWRKALPKLVVLEGEKFITCPEIRRGRGVVTCTKTKNSVHCDLCPRGLANVLFPSH
Ga0335010_0003262_13200_13601F008812N/AMKRRLTNGERMIQWVGVAIALLGFVWNSVKDYQKGEIHLPQIPKQKQLTKSVYPVQYCLMAYDPNLDKVFYLHDNGIWYDYAPQQRRYEATPQVRQIQDQGQTFMGNGYRSQRRSPGYVYGQQAQASTNTARY
Ga0335010_0003262_5988_6245F088817AGGAMNGYELLAEFDRIIKDVILIPNDWLPENFRDNRTDSVSLADLERKCDSLEIGETDHQIEKSEKDKRIAAYSAMIEKEQEITYLPK
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