NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335010_0017004

Scaffold Ga0335010_0017004


Overview

Basic Information
Taxon OID3300034092 Open in IMG/M
Scaffold IDGa0335010_0017004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5760
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002333Metagenome569Y
F022857Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0335010_0017004_2325_3296F002333AGAAGMSNSTLNSTMTTQTVLELNAAQASIYTRTNIRRAYQDFDDSEIAGIGVRGDNCIVVRRDGSEQTYDRQLIKTAFSSYTHRLKDFFSYLGPHYRGPSVWRNNAYVLFKGWTYTHALGHTTSHAKLQAHWADKFIHLSDAVKLTTLLQSDQTDLGHLVAPDGFRFSNRPFDMDSELDNDKEQQQVLNEPSCSCGSFQRQLNNLSAFQEEIQGFKPWCIHLTWFQKYRELLCKRTEIRNAAHSGVSDKCVAWWYAPPVDSNGDGRFVLLHTKSGAQAPLSHWRTYKPQEVLTQNDAWDLFFNMMEVGYIPFPGTSLPQLKEAVKKS
Ga0335010_0017004_3_188F022857N/AMEPVTVPKLTVSFAIDIEVEYDSFGGKTPQDIAIALQDEIDDLLYEASPTVSSVFTSITALD
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