Basic Information | |
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Taxon OID | 3300034092 Open in IMG/M |
Scaffold ID | Ga0335010_0017004 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 5760 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (33.33%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F002333 | Metagenome | 569 | Y |
F022857 | Metagenome | 212 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335010_0017004_2325_3296 | F002333 | AGAAG | MSNSTLNSTMTTQTVLELNAAQASIYTRTNIRRAYQDFDDSEIAGIGVRGDNCIVVRRDGSEQTYDRQLIKTAFSSYTHRLKDFFSYLGPHYRGPSVWRNNAYVLFKGWTYTHALGHTTSHAKLQAHWADKFIHLSDAVKLTTLLQSDQTDLGHLVAPDGFRFSNRPFDMDSELDNDKEQQQVLNEPSCSCGSFQRQLNNLSAFQEEIQGFKPWCIHLTWFQKYRELLCKRTEIRNAAHSGVSDKCVAWWYAPPVDSNGDGRFVLLHTKSGAQAPLSHWRTYKPQEVLTQNDAWDLFFNMMEVGYIPFPGTSLPQLKEAVKKS |
Ga0335010_0017004_3_188 | F022857 | N/A | MEPVTVPKLTVSFAIDIEVEYDSFGGKTPQDIAIALQDEIDDLLYEASPTVSSVFTSITALD |
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