NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335010_0069136

Scaffold Ga0335010_0069136


Overview

Basic Information
Taxon OID3300034092 Open in IMG/M
Scaffold IDGa0335010_0069136 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2012-rr0069
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2455
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004405Metagenome / Metatranscriptome439Y
F041188Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0335010_0069136_2160_2453F041188N/AKNNIELFESNTKLEILEILASWIPPEVTEETVEKAGKNKNLTNKVALHSDRNIHMEGLGALSVGYNIVSKEASEKWLTHRLVRIAQPEEVASYYAKA
Ga0335010_0069136_710_1159F004405GGAGMDVCEVTDFMFPMKADIYFPILAQGEYGQPTKNWVYDRTITCNATSVGGLGSEDVKPDSFLKYENKLIARTKEDPRVSSNSANNATTNILITNIRDASDTIIYKETAGARSGKGTIYEVATVEPFTGPFGYTEYYKMLWRRAENQTVGD
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