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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034095 Open in IMG/M |
| Scaffold ID | Ga0335022_0000232 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32315 |
| Total Scaffold Genes | 50 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (16.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014513 | Metagenome | 262 | Y |
| F015061 | Metagenome / Metatranscriptome | 257 | Y |
| F097609 | Metagenome | 104 | Y |
| F101028 | Metagenome | 102 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335022_0000232_21576_22538 | F014513 | N/A | MADTLEEMVELVKGFVGDSGTCSYERGVKAVNQARRLLWNKRGWTSQEEYVQICCVNDCFTLPARYEQIKLAWVGDESASLADEWFNATNAFALQAGNSCHRGIVEVGGLHVLFRDYTTHPYQIGVMAEEVEDIGVELMFEAQDQYDTYHKVKVATANPPTLAKSDLLVKGIRGVTKPITKGRIRVYAYDTALEAKTLIAIYQPNDANPTFRRFKAPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAVLALNSRENRKAQEFLSNLSLAVQEQEKEMSNAEIPTAAPIRFSNYSRAENLIGSDLLSPSPNDYFLYR |
| Ga0335022_0000232_23269_25263 | F101028 | N/A | MPAEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNIPIIAGDGEAETIVNDILGGNFQGAYSYRATNFRTSDGILLSVSGIIYFLKMVNNRAFAYKIIEGNDPGMMHTWFVQAEDRAYIQNGYQNAIAWDGVLGTLTASEIQNQDYCEIVSVGTTDFMLIGAPSNTIGVKFTATGSGVGDGTVKIPAYRLNPYLAKMPIGTIMEYAFGRVFVADKFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVILTGNGAFSMDVSIPRSQWNTSNIQRISLLGRGCTSPYLGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVENDTPWMKQFASTMFFNNYLISTVAPQTYRAEGVEGLNRYHRGMVVLDLDQSSSPAPDAQLQFRWNGIWTGIRPTQLLSALIQGEKRGFGFSFDADNKNRLYEFTIAQGDDYGPNGTRQIESFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSYVDFRADSNPCWSQLKVPTTFGCNPCSPVVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPVGDCPEENQECEPFLCCQEKYWQYNIVN |
| Ga0335022_0000232_7948_8223 | F015061 | N/A | MSEQTPQNETSKTILEAFSFIKCEDEKLNERVHAMASLLHTASMMVIKSESRKGEGFEAIRYLETAFLYYKESQFRKRFDKQEEEAPRIIS |
| Ga0335022_0000232_9426_10253 | F097609 | N/A | MSNQLDGLEPKDIIKKVTGKIIKLFPEKQHEGNYGPYTIQNGEIEVDGKNYKLAFWKNTQPESAKGRTVTLSSTRGKHGMNGVTFEEESYKNKEGQQIHNEVIKVSASAKVEYDGVSDEPVRRNETTKVSIVTDNPEQALDQIVETHQYIDSLVRMAYLGKITDEETLRSYVSSVFIEANRKGISIGKSEPKSESKAEEPAAFDPKLWAEVTVPSGSHAGKRLGEIGKPALTKLYQFYLAKGFNTPFSKCVEQAAEDFHLDAPIVEEDEADEIPW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |