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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034095 Open in IMG/M |
| Scaffold ID | Ga0335022_0000489 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22748 |
| Total Scaffold Genes | 49 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (38.78%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000922 | Metagenome | 833 | Y |
| F001259 | Metagenome / Metatranscriptome | 735 | Y |
| F004232 | Metagenome / Metatranscriptome | 447 | Y |
| F005388 | Metagenome / Metatranscriptome | 402 | N |
| F010673 | Metagenome | 300 | Y |
| F057983 | Metagenome | 135 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335022_0000489_10999_11427 | F057983 | N/A | METNQQFVTAEKFDKLAKFLEKISKRLNEIEASNKKIMEQLESGGDSDDSAWEGFGPKPEKTPINPNAEQYTLELHHGPYTIYRHDGESDKEWQRRKDHLMDQRITFLNGSGQNGTPEQVAYLQRIEERLGRKVFEYPLATT |
| Ga0335022_0000489_1567_2805 | F005388 | N/A | MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSYNTTSIEPTSAEEWSAITLASGDNGGACDVTYSEVPVGFNSVTWSPERFALKGPLLCKDDLTYDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSVGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPIFTNQGMTIIFRRCTGSLTQIICS |
| Ga0335022_0000489_16074_16271 | F001259 | AGGAG | MRDCAFIYVNKTNGMIRVDSIDTARNVDGNPEWKHVSTVNPHVVLEQILRATIKDRNLIIKHLLT |
| Ga0335022_0000489_19402_19863 | F004232 | N/A | MKSNQTIVAVDPGVGGGFAVSTAEGILLFPMPESLPDTAQLLSGFKVSDSHLWVEKVPKFVSKLTSSASMATLHENYGIVQGLGYAQGYALHRVEPKIWQEPLGLGGRKSCETGPEWKRKLKSKAQELYPNLDVTLKNCDALLILHYAMGGGR |
| Ga0335022_0000489_3722_4177 | F000922 | GGA | MRIKKEDWERAKALYFAGQSWDAIANDLQISKKTLAQRASIEGLTKVKKEMRSLVSTKEIQSIESLSAIVRSKLAEDAASTIERVNSYDLDGIKDESTREQILGSVAKRSALVFGWSEAGEATSVSINLLGSMPDRFAEVVVHGTQAVSTV |
| Ga0335022_0000489_7066_7668 | F010673 | N/A | MNPKLLPVLEKLISRDVILQFFKPDNLPQSALAYIRHTYAMCRSLSWEEHDLIETLAPFADHIADSFRAGTAPDDSVYHLFDDGSLWLKTNAYSSVWADATDFAVEILLPRMELSRMDAQLLRAIEMGDAVESVLADFYSSFAHILNRDCGIPHCDAREHWSAYSRQLGEREREAAELGGSESGRAEGIRFASEYTVTNA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |