NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335022_0000902

Scaffold Ga0335022_0000902


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0000902 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17116
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (29.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F015597Metagenome253Y
F053888Metagenome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0000902_11769_12146F001923N/AVSASPINPEELPTEVKDGVVAAVLGGMAMCARLLLSTTPVSPGWVIRRVLAAGITSCVAGYAIAEHIQSPGLRMGAIGAIGYCAPEALDYLLKAFKARAEKEVGEIAGKKTNGKAKAPGKGKRKR
Ga0335022_0000902_12154_12429F003583GGAMAVILLTGFAGLSALSSAYIAGYVLETLQSRDSLVLIVSDAGLKSDSASVEKGLSSATLALKSVRDLGWALAVGCLGVGMAVFLRSRRQKA
Ga0335022_0000902_13365_13625F053888N/AMNQEPIDLITVGDRPLRLSRPVLPHAARRLAGVLPQLNALNIAGKSQADAAEALGVSVGAVRSWIALANLSWSNLNRRGPYAKRTK
Ga0335022_0000902_16552_16791F015597N/AMSDPKPFDPFDPISAAMGAMHGQNLLAAKDARIKQLEERLEGMREAGDQLWYCVRHAQRIHADELIDAIEEWQEARNHG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.