NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0001291

Scaffold Ga0335022_0001291


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0001291 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14555
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002085Metagenome / Metatranscriptome595Y
F012668Metagenome / Metatranscriptome278Y
F045054Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0001291_12694_13239F045054N/AMKPHNYLKYSQSRGLLNSLRIPDKSLEQYLNFGATGWVNYIAYQGDMSSGSIELCEWQIASAAKVLVLGSLPSIGAGLYIVKAGDFCQVGRYSYIATADVVRGSGLTVNIPVHRNLITELVSPVAAVIGQYGTTVAMGGDSYTGCTFPVILRDYPAYTLIPMQNDSFINWQGTFKAFEAV
Ga0335022_0001291_13236_13841F002085GAGGMNVIPPVDGTNNIRYADFLRITTPEEVFLISSAPSTLTIPAVDAQPFSGLGVLLKAGDAIRDIKSTANETTFSFAGIDTAFLGFVLSKNIKGSQIEAWKGFFGTDGVLLTAGGTGGLYQYFNGYITSFTISEEWIEEARSYIGVITVSASSIQMILQNRTAGRYTNDNAWQFFAPGDTSMNRVAFITTINYNFGKDALATS
Ga0335022_0001291_7680_8024F012668N/AMTIVRYENLTINNVTNGVDTVGEYTTTTTPWFETRGLVADVANSLRISERYRVYQDLVKITVNYTPNNKEIVDNQNLFSITWRGFDWRITDIRESNDRMKVTYICYRNDPETPV

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