NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0003624

Scaffold Ga0335022_0003624


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0003624 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9355
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012753Metagenome / Metatranscriptome277Y
F024038Metagenome207Y
F034484Metagenome / Metatranscriptome174Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0003624_1862_2587F034484AGGMENEVPYQFITTMLIIAIIVFFIVKFMNNTPSYDRFDEGFYGGVARGAGHPDCLRTLPEGSQLLDIVASANKVPAGVSDASADYKEMELILSKLACLKKDLLSPSGIVEATRTQAFETAHDRMNTGEVCAMCLNQSITARDLDIIFATWRDRGRVLLRKLCTEANLSEVQTVEVETLFKKAWEDVYDVATSRCLKTDFSKQNGGSTDGGNVGGVEPPSLKDMGTYDYKYGGVSASGWNGA
Ga0335022_0003624_294_452F024038N/AMDPNTILYELWYSIAESLFQKVCEVTDLTDEQREALRAVALRPNDFQISVEP
Ga0335022_0003624_532_933F012753N/AMAEANDVSEALTTPQENEIAMLTHSIIEWRRLKEENDRRKQEMREANTKMKALEDIIVRVMKSHNIGALDLKNSGGRVLFKKSKHKAGLGQKNMEKLIAEHLESQEKAINLMKYIQEHREVIIKESIAYEKSS
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