NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335022_0035001

Scaffold Ga0335022_0035001


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0035001 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3323
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002269Metagenome / Metatranscriptome576Y
F027413Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0035001_2296_3321F027413N/AVFGGEVSDFGISVRSPEETGFITIGNILAVGSLAKLTKALFPDALAKDEDGNQIYDILNELLINSWFEVAPALQWFNYDPTTTWANAENVGLGEIDQPGLYEMIARSADPAISYNLCAQIAQSAQGQIYEDKAGRVCYADTDHRSAYLAANGYTDLSANYAIPSTVKTILQIGKIRNSLVFNYGTNYNSQATALDADSIATYGRYQRSVTTNLHNLADVEDLMERELGIRAIPREQLQSITFRLDNSELPDAERDKLIDAFFGEPVIINDLPINMFNGSFNGFVEGFAIRATPGYVDLTLTLSPTDFSLVATQWATVTPGSLIWTGVNATLIWENAYGGLT
Ga0335022_0035001_483_671F002269AGGMKEQLLAAGKSYARAALASAAALYMSGITDPKVLANAFIAGLIGPLLKAMQPSEKQYGLGSK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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