NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335022_0045634

Scaffold Ga0335022_0045634


Overview

Basic Information
Taxon OID3300034095 Open in IMG/M
Scaffold IDGa0335022_0045634 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Feb2014D0-rr0091
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2889
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Cyanophyceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014956Metagenome / Metatranscriptome258Y
F021732Metagenome / Metatranscriptome217Y
F031483Metagenome182N
F041648Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0335022_0045634_1027_1284F014956GAGMNIQEFVINVTTTVCPSHIVEPLHLKKWWRQRGVGELEKWFVSGKAIHYNDEIDWNAISDHKKQMWYDSQNFQIQAGNEYSKRQG
Ga0335022_0045634_1281_1631F041648N/AMDYLTNTLTDNALTRYYELRIKYLEGEQERLRNEARADYLITLDFWIYAQRIIEVYVMFHKDANHEHYLDMIKTILKNLEAHDEKALDTAINRLRLEVITRCKQAIIKCDTIRESK
Ga0335022_0045634_1656_1910F021732N/AMSITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGWTFEPHNIDLSLYPVINDRNLMPLVDENEMDWVIIKN
Ga0335022_0045634_594_1052F031483AGCAGMNILKGKVKYTAGKVFEGQYGPSINAAITLENGTDIRVYGKPDDEKLKALQKDDSVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEGNNVQQAANVATKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.