NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335025_0005812

Scaffold Ga0335025_0005812


Overview

Basic Information
Taxon OID3300034096 Open in IMG/M
Scaffold IDGa0335025_0005812 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9203
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006743Metagenome / Metatranscriptome365Y
F010680Metagenome / Metatranscriptome300Y
F041644Metagenome159Y
F088554Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0335025_0005812_4661_4813F041644AGGAGMSLEFILERLTSVQVGGFWALIQVIIYALAIWLGLVILSKININEREDKR
Ga0335025_0005812_6036_6314F006743AGGAGMRTENWQGNTRGLRLVGEGESGPVLNPYGPVRAGLTTSHRTQSQALSESLNCLEREVENLNSKYCEAYVTLVSVMEHLVRLNALLKSTDTTD
Ga0335025_0005812_6495_6977F010680AGGAGGLAIVIQLSQAEVRVCALIAVERWLVKFGSEDRPNYASGKKFGKLEPEINANIRANVAEWAVARHYNLGWNMPWYPNDLHKARKNISDVGDLEVRTIRTQAAIPFWKKDVGRTIVGAKVLDDEYYSLVEIYGKFQADEYMIDQFADLSIDGWRVPVELLEV
Ga0335025_0005812_7572_7712F088554GAGMTEKYSWYKAALRRKKIAKAKTLKAARYVDEMNKRANDESTAPNTR
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Institute for Fundamental Biomedical Research
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