NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335025_0038590

Scaffold Ga0335025_0038590


Overview

Basic Information
Taxon OID3300034096 Open in IMG/M
Scaffold IDGa0335025_0038590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3194
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019635Metagenome / Metatranscriptome228Y
F036604Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0335025_0038590_2537_2746F019635GGCGGMAIIRIYVDGDTEQPTPTPTPEPPVDLQAEIDRINRTLCDVVRRIAKIEGDVRGLRLRLIEDNAERQGP
Ga0335025_0038590_2743_3192F036604GAGGMSLIQTPEQLADAIRNDPERVAACLGRIHRFGGQVPNCTVLRHSLEVYHRIDADPTASDRARLWALLHDCHEVLTGDVVRPYVTARLRMDQDEIDDAIVRRLPMRVPQLGSMSWEAVIAADRAVGAWELEQIQQGRAPYDLCQFPAKSWA
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