NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335025_0111478

Scaffold Ga0335025_0111478


Overview

Basic Information
Taxon OID3300034096 Open in IMG/M
Scaffold IDGa0335025_0111478 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1653
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007029Metagenome / Metatranscriptome359Y
F015095Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0335025_0111478_1065_1280F015095AGGMERAQLVIGLALGSATILGLGAGLVRHLVKFYLSELKHDNNGGHNLAGRVERIENQVDKIYEILLEARLRA
Ga0335025_0111478_196_810F007029AGGAGMGFLDNYEDVNARIKRFRSEFPSGRLIAYIEDIDIIKGTVLVKAEAYREYEDAVPSAVDYAFGNVSTYPNNMKKWFIEDTITSAYGRCIGLLTPSLEFNSRPTTQDMQKVETLPADSDPWSTKASIEDMATMASSIQDIASSLGGELVAAAPRCAHGSMIWAEGTAKATGKPWAAYKCTEKNRANQCNPLWHVLASDGKWKPQV
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