Basic Information | |
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Taxon OID | 3300034101 Open in IMG/M |
Scaffold ID | Ga0335027_0000436 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37398 |
Total Scaffold Genes | 68 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 36 (52.94%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004049 | Metagenome / Metatranscriptome | 455 | Y |
F004232 | Metagenome / Metatranscriptome | 447 | Y |
F031459 | Metagenome / Metatranscriptome | 182 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335027_0000436_20127_20297 | F031459 | N/A | MTNDTNSSSGLGLSLATAATAGAVSLLPQLTEWFRFGAALLAFIAATIGLYKALKK |
Ga0335027_0000436_3119_3337 | F004049 | GGAGG | MNIPIGPAAFVFRHKRTGQIVVVPNERWHELYDKKDDWEHTTSLNACGALQYMIDAKPAERNRYIKSLTEQP |
Ga0335027_0000436_35774_36229 | F004232 | N/A | MNKTIVACDPGVNGGFAIHTKDGILLFPMPESLPDMAQLLSGFNWADSHLWIEKVPKFVSKLTPAASVATLHENYGIIQGLAYSQGYALHRVEPKIWQEPLGLGGRKACATGPEWKRKLKSKAQELYPQLDVTLGNCDALLILHYALGGGR |
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