NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0000436

Scaffold Ga0335027_0000436


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0000436 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37398
Total Scaffold Genes68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (52.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004049Metagenome / Metatranscriptome455Y
F004232Metagenome / Metatranscriptome447Y
F031459Metagenome / Metatranscriptome182N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0000436_20127_20297F031459N/AMTNDTNSSSGLGLSLATAATAGAVSLLPQLTEWFRFGAALLAFIAATIGLYKALKK
Ga0335027_0000436_3119_3337F004049GGAGGMNIPIGPAAFVFRHKRTGQIVVVPNERWHELYDKKDDWEHTTSLNACGALQYMIDAKPAERNRYIKSLTEQP
Ga0335027_0000436_35774_36229F004232N/AMNKTIVACDPGVNGGFAIHTKDGILLFPMPESLPDMAQLLSGFNWADSHLWIEKVPKFVSKLTPAASVATLHENYGIIQGLAYSQGYALHRVEPKIWQEPLGLGGRKACATGPEWKRKLKSKAQELYPQLDVTLGNCDALLILHYALGGGR
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