NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0005486

Scaffold Ga0335027_0005486


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0005486 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11153
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (64.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000264Metagenome / Metatranscriptome1424Y
F043941Metagenome155Y
F044495Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0005486_5641_5775F044495AGGAMNKFEKTLIALAVAGTVGFSFAFAVLKRVPEAFDWEFDEEENYE
Ga0335027_0005486_5772_5963F000264AGGMILRRKKLTINIVGAKLYTSEAFMRKRYLVDKRSPEEIAKECGSSVETIYVYLAKFGLRKSKR
Ga0335027_0005486_9545_9721F043941AGGMPSYTVYHGKFICHECKVEVSSLRLYADTKTMTWMCPSKHLSTVKFGKQKKNANDRKE
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