NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0006082

Scaffold Ga0335027_0006082


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0006082 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10581
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038210Metagenome / Metatranscriptome166N
F046910Metagenome / Metatranscriptome150Y
F065707Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0006082_10020_10268F065707AGGAMRPAEFSTEKPPQPITCVETLEYVNGLRRRIEVQNDLMEHLAVQVQQLTRKNRRLEEEVEKLALDLGIMDGGPGVGWVEAPR
Ga0335027_0006082_8836_9078F038210N/AVDLLHNVGMNIEKNIPLPGGVDPRERYPFPDMAIGDSFMILDKDWIKNLRSAAYMYSRRHPGTRFTCRRYGEGWRLWRVA
Ga0335027_0006082_9784_10023F046910GAGGMTHPLQEILDVLGSRPMVQVVILTAGGVKYALIGPVIQDPRATECGEVTEIEFGDLLPLEVAAKMLSGEHKEALGTSLQ
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