NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0012665

Scaffold Ga0335027_0012665


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0012665 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7285
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F001897Metagenome / Metatranscriptome620Y
F009883Metagenome / Metatranscriptome311Y
F016643Metagenome245Y
F032155Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0012665_1307_1465F009883GGAGMNEISIVIMCLIAGALWAVTAYSVGFKEGERQGYTRGRAVARHAVSADRKAK
Ga0335027_0012665_1568_1762F032155AGGVGEWTAVGGLVITTLAAVYSSMRIIIKAVMSELSPNSGSSLKDQVSRIEARLDYLYTQLIEEKK
Ga0335027_0012665_3592_4839F016643N/AMSIFNPVWRVRVGGIEYTNYVLANLTITSGRTNIYEQANAGYVNLQLINLDQSIIDIEINDAVTVELKDSTNTFVPIFGGTVVEFDIGITASGVVGINQSVSILGLGALSRLPKSLTDGVLVKDHDGDQIYSILSDLLLNTWNEVPAALQWNTYTPTTTWADAENLGLGEIDRPGEYQLAKRNASTTDVYSLVSALATSGLGYIYENAQGQISYASALHRSIYLATNGYTDVSAAQALSDSLSIQTRSGDIRNQITIKYKENSTLEVTDSDAESILAFGPLAQIITTTIENQTDAEDQAAFYLKLRSYPQANFRQITFELTNSEIDDADRDALIGIFMGLPLRIADLPLNMASGTYLGFVEGWTWRAAYNSVSVTAILSPLAFSLQAMQWQDVAIAEQWNTISGSLDWATALVVA
Ga0335027_0012665_487_696F000403AGGMGATTMSDYVEIIYPQEMKARLMCNGEVVEEYKIEQCDKCSQLRRLDHFGYQKGYDKQDNIIWFCGDCR
Ga0335027_0012665_678_1310F001897GGAMMASFMDGYEGNKERTDRWIATFPQGRLESHIIEFNAEKGYVLVQAKAWRNQTEIDPAGIDYAYGYLAAYSDKMRRWMVEDTCTSALMRVMALVMGNTEKATKEVMALVKSETPAADYDYWSTKHGDVPSYQTAAEAEQAGTPSFGSSDDSAWTADAVPSCSHGSMRWNQSKPDAPKSWGGYFCSEKIKEKQCSPRWYVLRSTGTWEPQL
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