NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0014747

Scaffold Ga0335027_0014747


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0014747 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6725
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003540Metagenome480Y
F028788Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0014747_3360_3611F003540AGAAGMQKIVDMLFPVLLAAVGWLLSEITSFNNRLIAIEGKMPALITPEGVPTDSPISAANRQRQKEELLDKIYDLQMRVKLIEERGK
Ga0335027_0014747_5650_5955F028788AGGAGMAMQTDVLASKVRTDAGQLLDQNSLVIGRARVKAIYIIPAAGAGEVVFRDGGSGGAVKITVNTLASSSAPDYILMPGEGLLFQENIYIAPSAVVSTMVIYG
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