NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0020447

Scaffold Ga0335027_0020447


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0020447 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5626
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002357Metagenome / Metatranscriptome567Y
F028151Metagenome192Y
F032271Metagenome180Y
F055549Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0020447_1007_1300F055549N/AMTELKSNHQQLLAIYATMTDYFMRAICFDAIPAMQLTGFLIMPNYDYMCDGEGLLIVLDLPMDHKIPHCQVCAAPLRRVYTAVPTIFKGTGWAGKDG
Ga0335027_0020447_1353_2012F002357GGAGGMAFNLEDYEDVATLNKWFISNYPMGRSDISVISHDAEKGHILVQATLWRDAKDTSPAVSNIAFGSRETYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMRKVETSPSFKEKLEARQNMYGKAGSKSAQIETILRDSFEADKPAPVAWSVGEVVDAIGSSIPNEPPACEHGHILKEGISKGGKPYRGYVCKAKQCDAKWAKLTANGKWYFEGGE
Ga0335027_0020447_2295_2507F028151GGAGMNTWLELRNVGLDVAAVMLGIGFIYWIIYEIRDTAFQNGYWKGRAHGWEMHRRMTNIKAQSDEVFDYDKN
Ga0335027_0020447_5194_5403F032271N/AMTRPIVKIHNTQTNEVIEREMNDAEFAQYEIDQAKFAADKAQAEAKAQAKVELLERLGITEDEARLLLG

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