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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034101 Open in IMG/M |
| Scaffold ID | Ga0335027_0037647 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3997 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014956 | Metagenome / Metatranscriptome | 258 | Y |
| F021732 | Metagenome / Metatranscriptome | 217 | Y |
| F031483 | Metagenome | 182 | N |
| F041648 | Metagenome / Metatranscriptome | 159 | Y |
| F052398 | Metagenome | 142 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335027_0037647_1180_1434 | F021732 | GAG | MSITKYTVKCCLDKKLGHFVHVIFSSGFGLYGGNKPHHEDDNIEIHGWTFEPHDIDLSLYPVINDRNLMPLVDWNEIDWVIIKN |
| Ga0335027_0037647_118_576 | F031483 | N/A | MNILKGRVKYTAGKVFEGQYGPSINAAITLENGTDIRVYGKPDDEKLKALQKDDAVTIIHDGKSYKVAFDMVTANDLPEKVQTPTEQTNVQQAANVTPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKFF |
| Ga0335027_0037647_1780_2514 | F052398 | N/A | MNLPMIAITIEEKIQDVQLVIDNREKRLFKTGIVESLPKINQVVKQILPLYGIDASPEHLVEVTQFITTYKLIAVDEIKLAFEKFARQELNIDDHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKMEEEQRQIEAKRKFYAEFPEMLTGFKGESYEDVPVYWYDAAIEAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRVEEEGKKRAIIIAQKLAVWRIVLNKT |
| Ga0335027_0037647_551_808 | F014956 | GAG | MNIQDFVINVTTTVCPSHIVEPNHLRKWWRQRGVGELEKYFVSGNAIHYNEEIDWKKISDHKKSLWYDSQNFQINMGHEYSKRTS |
| Ga0335027_0037647_805_1155 | F041648 | N/A | MDYLTNTLTDNALTRYYELRIKYLEGEQERLRNEARADYLITLDFWIYAQRIIEVYVMFHKDANHEHYLDMIKTILKNLEAHDEKALDTAINRLRLEVITRCKQAIIKCQTIRDNK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |