NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335027_0207681

Scaffold Ga0335027_0207681


Overview

Basic Information
Taxon OID3300034101 Open in IMG/M
Scaffold IDGa0335027_0207681 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1385
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001923Metagenome / Metatranscriptome617Y
F003583Metagenome / Metatranscriptome478Y
F042341Metagenome / Metatranscriptome158N

Sequences

Protein IDFamilyRBSSequence
Ga0335027_0207681_1092_1385F003583GGAMAKAKQLPSGSGNLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDIGWALAVGCLGVGVAVF
Ga0335027_0207681_441_758F042341N/AMSKPPRKSDPPAVKYAEPHFTFRILGKVKPSHDPKCKTPFGYCWKGYGDIHVDPRQPEHELIDTVVHELIHDTYPFLDEDAVEAGATRIAESLWRMGYRRTVINP
Ga0335027_0207681_755_1129F001923N/AMSASPINPEEIPPEVKDGVVAAVLGGLAMVSRLLMSTEPVSIGWVVRRVTAAAITAALVGYGIQDQIQSPGLRMGVIGACGYCAPEIMDWVVRYVKARGEKEVAAIAGKPKSNGKGKAVTKRKR
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