NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335029_0000030

Scaffold Ga0335029_0000030


Overview

Basic Information
Taxon OID3300034102 Open in IMG/M
Scaffold IDGa0335029_0000030 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)148899
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)91 (53.53%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Aurunvirus → Synechococcus virus STIM5(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014121Metagenome / Metatranscriptome265Y
F018913Metagenome / Metatranscriptome232Y
F024768Metagenome / Metatranscriptome204Y
F049575Metagenome / Metatranscriptome146Y
F063620Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0335029_0000030_13899_14171F024768GAGMNYETEIIDGHKAVVRHFFKPHEIQVGSRWARADGSKGYVTVEEIKVYPASDHEENHWYEIYYSWEENGVKKIHNKDHFSFQCRYCLIVE
Ga0335029_0000030_14871_15083F063620N/AMTNPIIPKVAYIPLEYHMSVEDFLEVWKDMKMEEEPTQEDYDTFILDRGKSYFYDMRGELELYIRLTEDN
Ga0335029_0000030_15352_15576F018913AGCAGMTNQQKAEELLKVFWESQAHNPAWLLQETLQHLRKQLSGNNVLDFYDEQGMMYNYGWDDCLKEIDAICDELLEL
Ga0335029_0000030_15991_16197F014121GGAGMTDTAYQIWETFKAELIVEPTDDMKQALASSIRVISSLIHRDGVLDQEPLFIHIADELNELADNVEAL
Ga0335029_0000030_16654_16857F049575AGGMTKLSAADLMVIHNTLYKSLSVIGNSIWTQETRERVMDKVSIIMENMNAEVVYGDVEPIVVSGDLGG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.