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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034102 Open in IMG/M |
| Scaffold ID | Ga0335029_0000592 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jul2002-rr0112 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 28955 |
| Total Scaffold Genes | 40 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (40.00%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001259 | Metagenome / Metatranscriptome | 735 | Y |
| F002621 | Metagenome / Metatranscriptome | 542 | Y |
| F004206 | Metagenome / Metatranscriptome | 448 | Y |
| F006135 | Metagenome / Metatranscriptome | 380 | N |
| F007030 | Metagenome / Metatranscriptome | 359 | Y |
| F027822 | Metagenome | 193 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335029_0000592_11404_11637 | F002621 | N/A | MCNMAKLLNPSRMIWLLVLPICLGCQQTKVVLVPSGDPVMLAKPTTASVYAFDADKKLVGPSTVTLPAGWYVLPKSQ |
| Ga0335029_0000592_21476_22291 | F007030 | N/A | MNNPTAAINMNDPFIHAPQATAVVHEPTTSGTRPSIHVSLYAYGGISAACLMSWVGLTANFSTSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQIDHDIEFDAKDIIRMAELAHEHQATVCIPYPCRALPLRPALRIDTEHVKALRMQTSDAECATELVPIRMFASGCLAIPRRCLMSALDWLGGSEVPNPYRIDWCKDVRVDQFPTLWMPFAMDTLPGQYEYLSEDYAAAVRLSLCDVKHYAMHPKKHLNHWGEYPYGFKPYVG |
| Ga0335029_0000592_27374_27886 | F006135 | N/A | MSTHIKIENQTEVPILVALFEQPKCNDHPTRSAVLKPGESCNWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHEGDIDWANVKAMSSDDLTATFGSTYTSAKSSTKSWNGMSSCIFHVRGGPSWVEETEQVGIFRPKTIAYNGVQSTPMKSE |
| Ga0335029_0000592_27883_28095 | F001259 | GGAGG | MNQISPDTVAFIYLHAWNGAIRVESLETAKTLHDRSEWKHVATINPHVFLESILRASIKERNQIIKHLLT |
| Ga0335029_0000592_3214_3648 | F027822 | N/A | MPAEIKDIGSIYAEATAGSEAARQWLAAWHFYCHAIDDLVDGDVVLNTESMLDLLIQANSLYSMPFYIEHGIRLAPMVAQVTSTYADSVAWEKSDIEWKARISDVIRCCGNDMVLQVAWILGGYSRMRAISLSLREAAYHSQHS |
| Ga0335029_0000592_5901_6314 | F004206 | GAG | LIPLITDYLLHKLPDSFQGWTREAVEDYVMFHAEQGTLKVALQDEHVVAVLVGWRQMGPEPKEWTWQKSDPNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGYRNGKLTTYKQGSMPIYKVANKKYGIS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |