NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335030_0000832

Scaffold Ga0335030_0000832


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0000832 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27188
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (88.89%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006017Metagenome / Metatranscriptome383N
F007913Metagenome / Metatranscriptome342Y
F027501Metagenome / Metatranscriptome194N

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0000832_21453_21638F007913AGGAMTKDNLSQIIERLDRIEKDLNDIKLEMAETRGAYRLAKFVIALLGLSGLGGITAWLAGQG
Ga0335030_0000832_23275_23889F006017AGGAGMKFKVKSQLDHVEKGGILDDCGPSSAAAAVAWATKYKLDPSAGDGIKAKEKATGFVEKQGVSDNGSSLGDLIKTVKHLGATARPAKSWDDVVASAARGAALIVWVQQAVGYPDVEISEWHKKWANYWKKSGPSHIKEGYGHMTAAGFDAVEGWQWACPTRSGKGKEKFAVKVTEAQLKAIADSKRVAGKDKALPHKHVVIVEVK
Ga0335030_0000832_23899_24192F027501AGGAGMYQDIKNGIRWVIDNTGVDEALIEFFRTFITVSISVALGLGIPLLDITGGDFRTVLSAGIASGLQVLVKFLDPKNSAFGIKDKSAGAEVDDDNQFKI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.