NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0002381

Scaffold Ga0335030_0002381


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0002381 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15017
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016000Metagenome / Metatranscriptome250Y
F066464Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0002381_12941_13411F066464GAGMRTKGQGYMVVNPNPKGGGWASAMGWAAKYYQQNQTQKNPNFDTIGKLVIQNYAKDLGSGVFYGWDVIAADEMDDVYLFQLQNRENSKLRVYITLGRELQTSDLENNLHQMYQCYIHDDDGDWDETFWLDANRINHKEFWRLIENIVDKHHPLLPF
Ga0335030_0002381_14506_14895F016000N/AMNSKEFVLWLKGFTEGVHEFNITPKQWDLLKDKLAEVKDETPIGFPFGVPNTAPIQTLPHITPSPTNPYRPYEVYCGDTNGTTITTTPNVGGSITIANPPFGFGVTSTAYGYPSGSAWHYTNGKPHNED
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