 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034103 Open in IMG/M |
| Scaffold ID | Ga0335030_0003119 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 13014 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (26.92%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F062767 | Metagenome | 130 | N |
| F067748 | Metagenome | 125 | N |
| F082706 | Metagenome | 113 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335030_0003119_10047_12011 | F082706 | N/A | MEELIGILLSKLLDREIREGRHDYIVEAREKAEELEYHFENEYPDKLLHTQHPSEEPWMKEYRRRRWQAPTTTATGRVFTFLQKIQQADDFKITFESDFKKTGIAERIGLMDNTLKHYVEYELPKTGSLEKWLFNVFLKTYLKDSNAVVITMPDYEDFIENPSGTTTLDWSKPYPHIIESEYLIWEGEDYIITKTEDYKDMNRKKWDQFLCFTTEGLILFRQVNEYTYEQPFQIFILPYQFGYLPACKVGNIIYEEEDGQLVYDSVLAPCLPAWNEVLFRTDDLNILWATHALPQKWALKMSPCKTCNGTGIRTNRKEEKIGCNDCQGSGRASSSPFGLMEINIDRVSAVNPTPLVPPVPPAGYIERPTETVKLFQEDILQKEFQGFKAIGLELLGQIPAAQSGIAKEYDRKELNTFCFSVTVHLAQVYRKVCFYIMLQRYNALFASSLMDSDKIQAALPQITVPTDYDVMTADMVAEQLKKAVDSKFNPLITSGIEMDYVEKLYGENSIQKTYLKLLSSLDPLPFKSTDEKTVLLASNGCSQLDYILSANLAAFITLKVEEDATWYDKPFNVQKAEVYALAAEKQMQIKSGLVPLMDDVQDTSSPADEADNLGKLPLAIQQLSLAAERANKAGNAKLFKVLNDKINNLLSEIG |
| Ga0335030_0003119_2138_2623 | F062767 | N/A | MIVTKVTVESALKNLCENLAGTFVNNMLNYGEAVESIVEGSAGNYVTKDGQTYCAVNDTYPLVVFLVREGASVETTPAGGRANSLLRTVNLKLVANSTFENAEFGITSIINRTKGITYAGTDFNSKAIANQYFGLAERNFETYFFSIDFTVTERISCEVAC |
| Ga0335030_0003119_5984_7018 | F067748 | N/A | MNCLQNYIGLKGCTAGEPLSGIYINDYPGMSSELLDKIATPEQASYVGMWNSAQSVSYIRIKRDIQAALFTSAEAQLDQVLFQTSKEFVQQWQQITTVPAEAILKGAFVSVQGSKYLALRVKQIYVYNAGAPVAGVPWYIYQTQDGKLLDSGTADLISGMNYIPVNNEFYSDFDKINMMVAIDCTNVPTTSGFFIDWGWNQMDLECATRFTYLWRNGWSIFPVTAPLGYGFGDSWNQDNSQSGVYIDAQLLCSLDSFICQQQEFLIDAWANLLCYQILWQKVASPRANYFAQGNREFTERAMATFLDGYQQSLAIWARQLNLRGEGLCFNCDNAGLIQQGFVRP |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |