Basic Information | |
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Taxon OID | 3300034103 Open in IMG/M |
Scaffold ID | Ga0335030_0003480 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 12276 |
Total Scaffold Genes | 33 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (69.70%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000441 | Metagenome / Metatranscriptome | 1136 | Y |
F023344 | Metagenome / Metatranscriptome | 210 | Y |
F038246 | Metagenome | 166 | Y |
F047059 | Metagenome / Metatranscriptome | 150 | Y |
F060917 | Metagenome / Metatranscriptome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0335030_0003480_10194_10337 | F000441 | AGGAGG | MKMSDKYLNDQLSKAQKLLWGGSETENIEAHNIISKLIKDKIEQVEL |
Ga0335030_0003480_10894_11070 | F047059 | GGA | MKIHLISLNQDLEDARNNVPLNEDEYFESDAYYTGAIDTMEHILSVANDIMINNERVY |
Ga0335030_0003480_11391_11603 | F023344 | AGGCGG | MEAFTDTVGEHILGAIQVDIEQALFEDWNNANLEEGEAFAEYKFMQFAPDNLKQSYNEYYGYIEGDEFCL |
Ga0335030_0003480_4847_5110 | F060917 | N/A | MIEWLARRIFSWTSLREYIFDEVHLYDHLDSIMSDPERMKTGSLSWMEGDMWYGWTYDSNAKRYYFDDIGNKSLIGLWEDQFLSKAN |
Ga0335030_0003480_7892_8062 | F038246 | AGGA | MAILDNLEAYLEKAGDEEKCYYCQNIAKYTDVAHKDHNNYVVVGVCECHAYKGLVS |
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