NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0006457

Scaffold Ga0335030_0006457


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0006457 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9108
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030758Metagenome / Metatranscriptome184Y
F043932Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0006457_2704_3069F030758GGAMSTTDKDFKVKNGLNVAGEATFGSNVVLGETPLRFDTATNKLQIQLNGTWVPIAFNSEIPDIASQISFMDIGLAIDYNGEPIYTVQGNGVNPGATSKFVDGGSPSTTDADVSMVFDSGVI
Ga0335030_0006457_5224_5595F043932AGGAMAKKFKSLLNLLTLPEDPLVGSSGDVYFNVTSKNIKIYNGAIWVDLTPGSTDPAPFYMHTHSYDGDVHTINLQETIDFSNINENSSVEEDIPVIIGIDGGSPNSNYSNASYTQLTLLDGGEIA
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