NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0010011

Scaffold Ga0335030_0010011


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0010011 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7271
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040102Metagenome162Y
F090303Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0010011_1973_2197F090303AGGAMGSNLNWIDERSPFKKQKDYLDSSNTTPGWRTILNIDNYVNCNACTRRIKKGQKMLWHSETDLKMHLAKDCKLW
Ga0335030_0010011_5827_6540F040102AGGMESKLNKEQTRNLRDNLAQIPLLQIEAKSFLVPGRTGSGSPTNERSIGFNVSAMDYSMAADILPVLHKYEAIIRRGRNLTPPALLKRYPSIDLEVAATVSFHLAHLDWTLQQDWVVDFAGEVKQLHSKGLSVTKKFIDKPRRIPCPTDGCKSHIVIDIENLLQGVTCYKCDTSWTMYRLLGLAMNNPNRTFWLDVDAICLWMNISKIQLNKIVKDHNVPTKNGLYDISAIAKARKLV
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