NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0011216

Scaffold Ga0335030_0011216


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0011216 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6869
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002259Metagenome / Metatranscriptome577Y
F003659Metagenome / Metatranscriptome474Y
F025444Metagenome201N

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0011216_1810_2364F002259N/AMSAQDKMLNVASRLGLTSLKDMQGTTRMVYDSQTTAATNHTFFKGAAQRAFPLSNVGANGNQFQVNEALLVEKIGFFIPTAADGIAYTGLGANNRSVLFDLVIGNKTVMKDVSCELGGEQAFYNDGTSASSVIDLEGVGILIPPQVEYYVVAKIYNAAARTAETARLGCYLFGTGALLNFNTTI
Ga0335030_0011216_184_822F025444N/AMYLQLAGLEPLDTAENPLAPGATPYKYKNYYLGQGQDIILPDALFPPNVEGYAKALKDLGDLYGKYTKGKKTPAAVVKTPGMSVIDPASLLLIAKAVYAGVQALSTVFRGQVTTAARQRITELYNGNNFNVQNLNRMTARQISDAITQIDSQINMTPRTQFGRQMALARFRLVYQQRFDQVSGGGGFLTTLPGWVLPAALGLGAVLLLRGRK
Ga0335030_0011216_6104_6472F003659N/AMRPEDVVGRYLIAKKDVPIYNFPFGTRIGTIKKGNSTPEVFSYVVRQGQVFWSFDYTIPGQTPSSYYALASSDAFSLSTVPGNVVIAPNVLPSVDVFPKGSQVKTFALYGIIGVLALLLLKK
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