NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0016872

Scaffold Ga0335030_0016872


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0016872 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5586
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059762Metagenome / Metatranscriptome133N
F060645Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0016872_2794_3045F060645GGGGGMRFLLAFLVVMAGCVATLPGDNGVTADLAAETARMVVQMRQEIPPTPAPPSDGKCKNCEGRGYVGDGRVKIKCQPCDGTGKAK
Ga0335030_0016872_4808_5164F059762GGAGMSDSKIRRKSKVHPFTLSTATSVANTIPMFDMAGGIVEMGTVSTNATQLNLWVSDVEAGPFYQLYDKDGAVVKITLSASTTDGRAYSMPDEVFAAQFIKFVSHTTNSTGTVGTVMFKG
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