NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0027153

Scaffold Ga0335030_0027153


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0027153 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4376
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002487Metagenome / Metatranscriptome554Y
F004432Metagenome / Metatranscriptome438Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0027153_2656_3387F004432GGAMVTKKPPAKVAPVKRRTPKPKAEQTINVTMATPSAPSKPEAKKDDSTLGKVIGLIEWVDNPFKLFTVILLSFLAFAGYFAWDSRQVILQAITTQDKMPQLAKQEALLTPARSLLKDVDGVVLLVHKANLATNSRTTVLALNIDGSREKSMEGTVTSLFNASADRNSAMVAMLNGEVLCEEFNPSSKVGEWGVKQGVKFMCRGSIPPDMGKFAGYVAIGFKEKPEDIAALKTRINLASTDMSEE
Ga0335030_0027153_288_464F002487N/AMITRQDAIQDLSHGDYCCYCTEPKTSGSCCGENHFVPFEDLYDDDKEAMIEEYLNKGK
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