NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0030287

Scaffold Ga0335030_0030287


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0030287 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4128
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009945Metagenome310Y
F016922Metagenome243Y
F026794Metagenome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0030287_1189_1533F026794GGAMPDFHNSISDRDFNVTASQLRHAENDAREATRGEVTFDELDRRYADPISREELTALLPFIIAFTERETVWAYELMERHGRPMHTWTPIAEWDAHFRPECLSLTYRTDNPFAEQL
Ga0335030_0030287_1_363F009945AGGVVVSGRHDYRRNIVSARDVAETVDARSAQHHAMSTALATFKRTHGVATHRLAGAGHRYPWMAFFSTITMKDGTRRAFTELAHEYSMATLVMRDKVTEGADELSACKLLAERNGIPWPADE
Ga0335030_0030287_2470_2661F016922N/AMNPIRISSRAIQCVADAEGATEYAIRYAGRDFLVTAHSRLEADIAVEYYRAPEADESQPDLLK
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