NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0040341

Scaffold Ga0335030_0040341


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0040341 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3532
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002260Metagenome / Metatranscriptome577Y
F011761Metagenome / Metatranscriptome287Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0040341_1684_2769F011761AGGAGMAYVLDGGANEGDGFTFAIANFALRAMHQASGLVDTTTVVAPNQGNQYLVPLFAPITYQDYAPNAAPGTSTSPGTGFGSAPGAAVEQTPSLGQQTITATPAVAATAFDYFYNWTTSFDLAATLGAELGESYAEKVDIRVCAAFAAANGFKVSPGNSNYSPTPVDGFARPTALGAMELAESGTTVTPAAGGTDGFSANSVLDLIRLVKQNYKVARLPGIPTIVLDSNGNSTGSVAGQTGSSLNRLLAELTGGAVSQSGGANLSALGNELLSTGKIESVYGCKVMFTTFLPTASRTFLSSGPFNVLVGAYFHDSALITVLKEGLQIKMGEKPGGLQMWLTGLAYMGAGVADPRRGGAINIQQ
Ga0335030_0040341_2798_3325F002260AGGAMSVPYQRISNATVQDIIFYDPAAERRASQMNVNWEEYFKVGSQEILYQMEFGWWPKYCDTVFGASYYTNLPNGSLISSFNPNLLIKSDQTLIRLDTFMAVKIFYESIVSDVSNVNDVDKANYDHALRRYQFEWEKALQLMNFYDLNQNAPNGPTTKLEENWTADVDYFNNDRRYF
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