NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0201043

Scaffold Ga0335030_0201043


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0201043 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1387
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024535Metagenome205Y
F037637Metagenome167Y
F105026Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0201043_11_280F037637N/AMNWQIKKKRVKQVNVSFEWTEKSDLKLILDDLKDLIASGVESYHGEKKSVEIEDKYHLIEFTQKYSDSIHESIEREINGELKLVIKSKI
Ga0335030_0201043_277_447F105026N/AMKTKIKEAVNTYFPNKPNLTYLKRKWQNKICPEDKGGSFNEKLYNDYLDAIINYTK
Ga0335030_0201043_945_1223F024535N/AMAKKKVKVDTEKFDMDLEKDGTNVKLDIDTKNVDVSFIKDEVKKEFKLDSKNIDIDISKTAEGLEVKVESKGGIWKLIAKKIVKFIMRKLGK
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