NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0401416

Scaffold Ga0335030_0401416


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0401416 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)890
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017601Metagenome / Metatranscriptome239N
F071950Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0401416_198_890F017601N/AMTDNTIRVRADITDDPDAIHTDDGGQDDQNVVVPPTPAAGAAGQTTLAFKVEQSKIPEYFGQKGKDNITAIVFIRKIEDLARTNRWTDATTYANVANNLKGFAREWLFATAEMLDWTPAQLTWTNLKPRFQRQFATQTDEKMIMEGLSNLAMKPGESTGELLARITNTMVIIKESYASYENKPPAPANFDVNNGFTMPVCRQWKDDVLNNTQQFLKMQLFRAALTPELRKV
Ga0335030_0401416_3_179F071950N/AVNKLDLTWKQSFLILVDSELFGRRSLYQFERLSEETEQYHFYTLLKEDSNKVNIKTFK
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