NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335030_0427529

Scaffold Ga0335030_0427529


Overview

Basic Information
Taxon OID3300034103 Open in IMG/M
Scaffold IDGa0335030_0427529 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)853
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000645Metagenome / Metatranscriptome962Y
F005878Metagenome / Metatranscriptome387Y

Sequences

Protein IDFamilyRBSSequence
Ga0335030_0427529_286_849F000645N/AVWDRFEKFKKDYPDYRHKSHILAESLSSQSDVFIIKTELYRTWNDAEPFATGLSSEVKSKQYSIELCETGSLGRALMMAGYPAKPKGANVPLKPIQTTKPELAEFVQEQRPNHPEPIVWDVSAIANQLGAEVIDEIPLCPGNCGPMVLKQGTKEGKEYRGWVCPIPKSGHPAKWMKIGSDGHWVFQK
Ga0335030_0427529_2_289F005878N/AMISDAHPFKCGNCKKVTAQRLVNIYDSEIIEGEKVWLTECQNCFEQRLIDPAERLANKEDDITRCDQCGNYKMKAAQCRVCKIAEGQERIKERYWT
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