NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0000118

Scaffold Ga0335031_0000118


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0000118 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)68195
Total Scaffold Genes124 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)82 (66.13%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007415Metagenome / Metatranscriptome351Y
F027826Metagenome / Metatranscriptome193Y
F103135Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0000118_2537_3073F007415N/AMANRKYPYYPAFDGKKAGAGVEWFVMACGRRWKAKNMGIYSPRLMRNSKTAGKKIGDPGMEKWLSVHATGAACDIGYPDRKTGLAMWDWFLAHTKELGIVEIHDYAFDANAKDGKPGYGRGYRCSRGEGSDPKSVKIYNEKENAGSFGGQWLHLEFEPEFAKDAAKMEAAWKSIPKPQ
Ga0335031_0000118_52770_53036F027826N/AMLVDMALQSAISTPEDIRAIRPVVPQQLFPQSRGMAKQEMGVADALTIDRAFPTYRSWVSGAPVMFRNGFMEDNFEGSSRYSMQGLWS
Ga0335031_0000118_54119_54544F103135N/AMYKMRPYDGPTEYDQELIELCDRHNAQFANQGAPDTCNALIFRTDPETASKLDVETALKNELNDMNVFIKDFRDELKTDALKCYNQHNRPKAGCADWCADDKTVGRKIGVPKEHRQYLCMYCPVGSWVAQQERIAMGLYDK
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