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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034104 Open in IMG/M |
| Scaffold ID | Ga0335031_0001204 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 19573 |
| Total Scaffold Genes | 38 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (13.16%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002778 | Metagenome / Metatranscriptome | 530 | N |
| F003786 | Metagenome / Metatranscriptome | 468 | N |
| F009808 | Metagenome | 312 | N |
| F019647 | Metagenome / Metatranscriptome | 228 | N |
| F038230 | Metagenome | 166 | N |
| F052594 | Metagenome / Metatranscriptome | 142 | N |
| F054865 | Metagenome / Metatranscriptome | 139 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335031_0001204_12604_12795 | F054865 | N/A | MEVKTNRFIIKYKEGIVSVAANDVAEAIERFKELRIETSAKELTIVPADEMFKRREEIFKASD |
| Ga0335031_0001204_12903_13802 | F009808 | N/A | MKKNFNNQNFEWLFQDITSSMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSEKRSKYPPRVAAAATVIALLELWFSIQGQSTGAEFYAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFILTVAYLPAQNNHFFAYNTMSLEKIDKGLLERRYYSEANESYTIDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGVWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH |
| Ga0335031_0001204_14401_14694 | F052594 | AGG | MAAKTYGLDKKQIALCDAMIAKYPKGIRTNNVVSSASTLVSFYNSKDERNKQFYEYMNPERMVSLLWQVVKINNEKEDVKEAAVRMLNKLLQNIVVN |
| Ga0335031_0001204_7130_7339 | F038230 | N/A | MKNKQDRNAYMRDYMKKYRATMNEYTYKMIRERENKRLRAKYRAMTVEERQKYIEYQRTYHKLKQFTNE |
| Ga0335031_0001204_7470_8060 | F003786 | N/A | MYGIDGDLAFYANIAKEIVKTFGQIATNEIEIAFRMFSAETLELDDDVKFYGKANMHTIGKILNGYMTYRRKIIASHDNEVAALRHQVQMEERGRLEREKLYAEFPTMIKEFTGKTWEDVPLYWYDMCLKFDMITYEEGEKRALWEEAQAIALKEPPESLDLMTIRSHAKKIEQGNMKRAVVIAQKLAVWRKVIKK |
| Ga0335031_0001204_8395_8799 | F019647 | AGGA | MKIVKGIVKYGAGAPREGQYGPSINILVTLEDQSQVRVYGKPGDVIERYKSGQNIQLIDDKGKYKVVEDEQQTMPAQAEQSDKPDLAALVFEMSAIYSQAYIDIYNKISEAGVPHESATAATSTIFIQVFQKLR |
| Ga0335031_0001204_9996_10406 | F002778 | N/A | VKEYNAQMMEIKAFCDELNTWISVAPSAEHLEECDEYLRQLSAYYSRYTVISGINESIYSQLLMMCIRDMPEDEYKRIKHSSTLTDYYVKGKYPKATAIFEQCRAVKQLLLITSDNYRTLLSSFRQERILVGHMTT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |