NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0001412

Scaffold Ga0335031_0001412


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0001412 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18182
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (72.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F071969Metagenome / Metatranscriptome121Y
F073551Metagenome120Y
F086839Metagenome / Metatranscriptome110N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0001412_13917_14600F000934GAGMATLNTILSISESVGIEDQRFIGQMMSRNQRIATSEIIGVQPFGFDMKPMNYLLYSQNRPLLSALRAADREFEQYLNFGSTGWVNYIAYQGDMSSAEITACQYQITSANKTIVLGSLPTMGATEFIVKTGDFLQIDRYAYIATANVQRGSGSTVNIPVHRTIMTTLVSPMFAVIGQYGTTQSIGGNTYTGVTFPVILQDYPTYTLIPMTNDSFIQWSGSFKAIEAVL
Ga0335031_0001412_1561_1758F073551N/AMQNSHETIDDHFNFLQNKTIKDVGTDYFNGKNYLVILLSDGSIAYISSGNNDGSLYLAIEKHLIN
Ga0335031_0001412_17227_17790F086839AGGMSIKFAVNGLKETLNAFKEFQEQFGDKDSKSKVLIPAVRDAMKPVLAMAKALSPKDTGALNNSLYVTARRPSRKDMKSRYVTPKDSVISLVSSRPIPKKVKQQFQAQYGDLKGKEYKKARRKFYTEAGVMFDARAIANEFGTANMSAKPFMRVSLESQAQMVATRLGMIIKQKMDAYKAKNLTTQGK
Ga0335031_0001412_8006_8224F071969AGGAMSKQALISPNEPRETGYRVAQVVDEGQTFEVGGLFWTPCADDVVADQFWYDPSDELIKPFPIVVEDAPAELT
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