NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335031_0002757

Scaffold Ga0335031_0002757


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0002757 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13219
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (41.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004112Metagenome / Metatranscriptome452Y
F011227Metagenome / Metatranscriptome293Y
F011844Metagenome / Metatranscriptome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0002757_10479_10682F004112GAGMIRGSESRKVDAYKQTRLLMFTMVRLMGDPKTAPKTPEALWQLPGDEQSGNVMNDDEMREIFKRLGK
Ga0335031_0002757_11122_11556F011844N/AMPQQILGSLQNVEIDVAGGSSYKNLVCLRTSSVNTTVDSTTEQTNCGPLTSVADATMSIDFDAVCEVAPTISQISYEDLLAAMVGKTLIAVRVQSPVVTGSSAGATYYHQFLGFITSLTLNQSTTEYINFSGTVTSNGIVDVTP
Ga0335031_0002757_491_622F011227N/AMTLIELKAAAYDLLAQIEHLQKQLQETNAKIGEELKKQNNENG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.