NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0003264

Scaffold Ga0335031_0003264


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0003264 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12138
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (82.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011742Metagenome287N
F034503Metagenome174Y
F078383Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0003264_11882_12124F034503AGGAMNKDEAHHLLNKRKQGFAVPLYLVNSALVVSGDLGMACLPCQATWVESTGMAQGEGIRELFHPFVDWNNNRFDEPHESPI
Ga0335031_0003264_4923_5138F078383N/AMKTKGGARPGSGRKPTQINESRALTLWKDGLSKKEIAKRFGIDYEAILYFFKKHKIFNRGKLKSQEPQKPR
Ga0335031_0003264_6497_6760F011742AGAAGGMTTIEFVPFEWVDDDFNPEIDRIEVDYQWHEGDDSVGLISYCEKTVKWMRFNLEIKDITDELSYADLAYLKHEIKRNDQEIASERTD
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