NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335031_0052182

Scaffold Ga0335031_0052182


Overview

Basic Information
Taxon OID3300034104 Open in IMG/M
Scaffold IDGa0335031_0052182 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2946
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024791Metagenome / Metatranscriptome204N
F058132Metagenome / Metatranscriptome135N
F097201Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335031_0052182_1180_1614F024791AGGAGMPFSRTSALIGENCVVTVAFGGYQDGTPSAFTAETYTCIARSVRFSSSVNTVDVSALCDAQNKAQVTKANGSVEVEFLVDSVVGPIFFGKDGYYCQIVVTPGTLAAKTFVGVVTGTGISVANEEAVTESATITLGTNGVATAWS
Ga0335031_0052182_1626_2018F058132N/AMALQSLKQIPKDTDKGLLTVDLSDVAGDGAELRFREPKAADLFPDAKELQSLRVAFAEFPEAMLYQIYLLGRCYVPDPADSSEESPLRAFGNLARTSKQTFFRILGEFISWYPTDDLQGRVKDAKNDSEV
Ga0335031_0052182_269_691F097201N/AMSFSLKKVRLDSYQKNLGRLSVAVGTAAANIEGNAKDSIEMSSGQYRKYPGRKEHPHYSSPPGTAPNSDTGILAGSIYNKMTGKTSAEVRVDAKYGIPLELGWMSKAGNHVPARPFLRPAVEKEAPAFQAAVKVILKGRN
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