NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335035_0000724

Scaffold Ga0335035_0000724


Overview

Basic Information
Taxon OID3300034105 Open in IMG/M
Scaffold IDGa0335035_0000724 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25627
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (14.58%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002778Metagenome / Metatranscriptome530N
F010541Metagenome / Metatranscriptome302Y
F012574Metagenome / Metatranscriptome279Y
F025505Metagenome / Metatranscriptome201N
F033801Metagenome176Y
F035767Metagenome / Metatranscriptome171N
F087195Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0335035_0000724_132_749F035767AGGAMGYLSAKQINHLKDLQKSNYAGRRSFQGMSLRIVGLADAVIEFAELMEQCTVKERSRVIDSATPIALDVYRSLVPVSSKPHRISTSPFKNKKMQGWEEDDGTHYDVQPGNLRKSIIDLSKNLVSYKRAVGAIGPLYKRNTMNRGINSSEGTNGFYAHMVFGSTRAWYNKIVVKARNLSREKVIKTMRDECIFIMQERPKKFWQVS
Ga0335035_0000724_17711_18448F025505N/AMNNLPMIASRVDEKIQDVQLVIQNRELRIFKTGIKEAIPKITQVLTQLLPVYGIEAKPEQILKLTDFIASYKLLSVDEIKLAFEKFAKDELNLNEHKLYGKIDLHAIGRILTAYTTWRQKIYFAMDSDLQAKKDEEDRIKRLGKVAEEYDKDFDNKLKNFNKTLEEIPIFWYDECVKRGYINDWFYGEKEALWAEAQEMARNEKPESDSMIDRKNHLRKIEEGNIPRARALAYKLAVWRKVLLRD
Ga0335035_0000724_18839_19087F087195N/AMTQEERQKAISEAFYQISIYAMVTNTCSKEGSHRLNYMLNIINQIPVVHDVDYSNFNHRYYKDILEQAIKDNDKFIEHLKSL
Ga0335035_0000724_21073_21528F002778AGAAGGMNLSVVKDSHSKNNQMKEYNAKMLEIKSFCEEINQWITTAPSAEHLDECDEYLRQLSAYYSRYTMISGMNESIYAYLMMTCIKNMPDEEYKKIKHSSTLTDYYIKGKYPNATAIFEQCRAVQKLLIVTSDNYRTLLSSFRQERILVGHMTT
Ga0335035_0000724_24193_24330F033801N/AMKYEIKWKTGKVITEAENIEEAIKKFKELRIKVPDKEISIASFGK
Ga0335035_0000724_24794_25129F010541N/AMKIKKKEKRGIKRPLHYLPLKNKQMEKTIYSVMYFGNAKRYQDLCEEVAAYSKRHAVEKVYSKMRNEDYFPEDDFLWGGVVKDCDGNVIAEIGSETIEYDGGYFYAEPVIL
Ga0335035_0000724_6774_7037F012574N/AMYLIEKLKMSIMEILMRKQDYAQQVRTINSNDGYFTRFYQLVGECSKHEEAWQKLEEERGELGLDEKYTTYNSFRRAKKAYMDIRFV

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