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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034105 Open in IMG/M |
| Scaffold ID | Ga0335035_0000724 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 25627 |
| Total Scaffold Genes | 48 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (14.58%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002778 | Metagenome / Metatranscriptome | 530 | N |
| F010541 | Metagenome / Metatranscriptome | 302 | Y |
| F012574 | Metagenome / Metatranscriptome | 279 | Y |
| F025505 | Metagenome / Metatranscriptome | 201 | N |
| F033801 | Metagenome | 176 | Y |
| F035767 | Metagenome / Metatranscriptome | 171 | N |
| F087195 | Metagenome / Metatranscriptome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335035_0000724_132_749 | F035767 | AGGA | MGYLSAKQINHLKDLQKSNYAGRRSFQGMSLRIVGLADAVIEFAELMEQCTVKERSRVIDSATPIALDVYRSLVPVSSKPHRISTSPFKNKKMQGWEEDDGTHYDVQPGNLRKSIIDLSKNLVSYKRAVGAIGPLYKRNTMNRGINSSEGTNGFYAHMVFGSTRAWYNKIVVKARNLSREKVIKTMRDECIFIMQERPKKFWQVS |
| Ga0335035_0000724_17711_18448 | F025505 | N/A | MNNLPMIASRVDEKIQDVQLVIQNRELRIFKTGIKEAIPKITQVLTQLLPVYGIEAKPEQILKLTDFIASYKLLSVDEIKLAFEKFAKDELNLNEHKLYGKIDLHAIGRILTAYTTWRQKIYFAMDSDLQAKKDEEDRIKRLGKVAEEYDKDFDNKLKNFNKTLEEIPIFWYDECVKRGYINDWFYGEKEALWAEAQEMARNEKPESDSMIDRKNHLRKIEEGNIPRARALAYKLAVWRKVLLRD |
| Ga0335035_0000724_18839_19087 | F087195 | N/A | MTQEERQKAISEAFYQISIYAMVTNTCSKEGSHRLNYMLNIINQIPVVHDVDYSNFNHRYYKDILEQAIKDNDKFIEHLKSL |
| Ga0335035_0000724_21073_21528 | F002778 | AGAAGG | MNLSVVKDSHSKNNQMKEYNAKMLEIKSFCEEINQWITTAPSAEHLDECDEYLRQLSAYYSRYTMISGMNESIYAYLMMTCIKNMPDEEYKKIKHSSTLTDYYIKGKYPNATAIFEQCRAVQKLLIVTSDNYRTLLSSFRQERILVGHMTT |
| Ga0335035_0000724_24193_24330 | F033801 | N/A | MKYEIKWKTGKVITEAENIEEAIKKFKELRIKVPDKEISIASFGK |
| Ga0335035_0000724_24794_25129 | F010541 | N/A | MKIKKKEKRGIKRPLHYLPLKNKQMEKTIYSVMYFGNAKRYQDLCEEVAAYSKRHAVEKVYSKMRNEDYFPEDDFLWGGVVKDCDGNVIAEIGSETIEYDGGYFYAEPVIL |
| Ga0335035_0000724_6774_7037 | F012574 | N/A | MYLIEKLKMSIMEILMRKQDYAQQVRTINSNDGYFTRFYQLVGECSKHEEAWQKLEEERGELGLDEKYTTYNSFRRAKKAYMDIRFV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |