NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000172

Scaffold Ga0335036_0000172


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000172 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58470
Total Scaffold Genes102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)83 (81.37%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014621Metagenome261N
F020493Metagenome223Y
F026223Metagenome / Metatranscriptome198Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000172_30280_30465F026223AGGAGMKHEDVKKDKPMMEKVAKKAVKGHEKRMHGMKAGGVTTLDMKKYGRNMARVMNQKSGSRG
Ga0335036_0000172_37022_37297F014621N/AMSILVIELIAVFIVAFLAFAGFFTDMRMLSKIGIFVMTMGLMVQVMRSLHFFEFGTYPVDTLFPLWITKDIGASIIIFDLALLHFRKAKEC
Ga0335036_0000172_57898_58110F020493N/AVEGGEMKSIQVVVVMWILFCGLIIYLTEVSRREEVYKLNCELLLGGWHPDVPKDYAKLCEEAKQTMRSDR
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