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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034106 Open in IMG/M |
| Scaffold ID | Ga0335036_0002864 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14986 |
| Total Scaffold Genes | 29 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (44.83%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001259 | Metagenome / Metatranscriptome | 735 | Y |
| F005740 | Metagenome / Metatranscriptome | 391 | N |
| F006135 | Metagenome / Metatranscriptome | 380 | N |
| F094883 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335036_0002864_11409_11921 | F006135 | N/A | MSTHIKIENQTEVPVLVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHAGDIDWANVKAMSSDDLNATFGSAYTSAKSNTKSWNGMSSCIFHIRGGPSWVEETEQVGIFRPKTIAYNGVQSTPMKSE |
| Ga0335036_0002864_12648_12848 | F001259 | AGGAGG | VKDSPAFIYVHAFNGIVRVESLDTAKHIDGNPEWKHVSTVNPYVALEQILRAKGKDRNLIIKHLLT |
| Ga0335036_0002864_3_953 | F005740 | N/A | RSTIARVVGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTIHTVGGCITWPRHIETIESVADCCGVGTVRNQWFEFQESGYGLLGENNGGCVGKQLVDRGTVVSYRDMSGETNSFIRVYPGDASDVGKTITLQGVDQNGQWIRTLSGGVWIDGEKLTLALPYVQSTKKFISLTGVIRQATNTVSRLYEYNATTLLELDLAVYDPDETLPQYRRSYLTDRCNNDEDKPVTVMAKMRHINATSVNDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVATIRMVGVGLNGGGFSQWF |
| Ga0335036_0002864_971_1849 | F094883 | N/A | MAIGLGAAILGGAGISAAGSLLGGLFGGKKPKVPELKPIDFAGEQRQAIQQNIASLESATDLATKTTAAEQSQLEAQLRRAIPGYDQLIAQAGKTIGSRLRGEVDQDVQSQLQRAVAGRAVGGGFKESEGIRTNLLARDFGLTAMQIQNQGLAQAQSFIQQQRTMGMAQPFSISSMFITPAQRIGAIQQQQSAMYGRDLTAAQVAAAPSPMQQSAQTAFTNFGGIAGGALSQYGMYQGLMQQQPGAYRPQSYNPQNDSEIYPNLYAPTPTRSDITPLSTSLFPEYGSSNYRP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |