NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0024661

Scaffold Ga0335036_0024661


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0024661 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4789
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032652Metagenome179N
F091645Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0024661_2_511F032652N/AMTIIHLSRSLVDQCKLCAQQRDYNRRSSIDYSSDKTDDKGIWSFIGVLGEVALLTYFELEINWEYLSTDLGFCGVDVGDIWEVRAMSKFGNRLFLWSDEVTKSSKLAYAWSKVVVDPSSGQCTICGWAMGYEIAMRGRHGQYDCKRSSYFLDNTLLRTHRDPKQDQIEAK
Ga0335036_0024661_4241_4492F091645N/AMDFTALFPEHVEPNRGPGISYCVAPNARMFDYELVMPGERRLRGCLRAINKKDAERILQNRHPSATKIDIGEGRKIISAPAKT
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