NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0025619

Scaffold Ga0335036_0025619


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0025619 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4685
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (72.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023253Metagenome211Y
F038004Metagenome / Metatranscriptome167Y
F079389Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0025619_2056_2253F038004GGTGGMAVRLGAMDTHIVLTALWDYRETLTNIPGDQPTQHIQVRDKIERVDRLIKHYRKSYFALDRLGIM
Ga0335036_0025619_2847_3065F023253GGAGGMMFWRKKQETMPHRDVQAEAALAISNAASVLPAKRFMDLVYWAIISNRQISVEDIDALANRLSRAAWERGRR
Ga0335036_0025619_4389_4667F079389N/AMIQAAKDRGWHLTLTAEHYGMHRSSIAAACERFGIVLPMHPFSPQRVSPKSKVWIDIADGETKPKVKLSASPAAVERTLRRLQNEKRLQALG
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