NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0104172

Scaffold Ga0335036_0104172


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0104172 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2078
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F011756Metagenome / Metatranscriptome287Y
F022400Metagenome214Y
F024719Metagenome / Metatranscriptome204Y
F036551Metagenome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0104172_1590_1796F036551AGGAMNEAIEVLLSNEIRICELCGSNEWRILHQGDESNCECEGECLRVCDSTLLSDDGCDGVAILISKGESL
Ga0335036_0104172_1915_2076F006842N/AGPRGGNGMKATPAICGDHLVPISECDCLSYMREITRSAERLIELAKERERLSK
Ga0335036_0104172_2_277F022400AGGMRRTVIERSQRTTLRLVSGGKEESGSALSPFGPVRAGLTTMPRTDKEVPLTELLNSLERKIAELNIKSYEVLNIFLSGTTHRAEPITFFSST
Ga0335036_0104172_564_863F024719GGAGMSNIKRYLEEGMSEVIQLPRRGKITVVFYEVSDPQGIAIWGGESPQEALDWYRRSPTGSKIWVSQYEADEEDAKLVLDLIEITPIVLATILDSVDRWSK
Ga0335036_0104172_860_1009F011756GAGMGDEYALTGGYEELINCLVCSKEYDRVEYRSNTCSDCEDLMIKREREKV
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