NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335037_0000208

Scaffold Ga0335037_0000208


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0000208 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38664
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (28.12%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061847Metagenome / Metatranscriptome131N
F080055Metagenome115Y
F097350Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0000208_15887_16096F080055N/AMTSSITSFIAPALPVQIPVAYSPTDELLMMIGATLGGAAPPAPTYHVVIGLDPGDHVLVGSGGDKVNYV
Ga0335037_0000208_31623_32189F061847N/AMQLALPNFDTFSIKELEDFAAAELSMMREEAQTASTISQTAFQRAWKVGKACVKLKEGVDEDEWEAYATQAVGAGDYYAVYRCMRLARMSPDKPPLQKTGSSQYKQLQIAMGLESAPKTTPRKTDVLKFQNLMASLGCIKRWWREGHVIETLDAEMIAEILEDMQFLQEIYETLQKQIPEATDTSASG
Ga0335037_0000208_32197_32391F097350GGAMLGEVPKRIQQTMDVSRETVADSQERLGDTGVLLREWIEWCESTGRAAHAADLIERSRAEMRNQ
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